After running like a champ for quite some time, I ran into sputtering and lurching about an hour into a ride. That it went from smooth to crap instantly made me look to electrical problems, since air/fuel/compression don't typically fail so abruptly.
Limped home on 2 or 3 cylinders and started checking things out.
Battery voltage is solid 13.5v. Coil voltage was spotty then went kaput in the garage. The relay fuse blew.
Changed out the fuse and she'd start and idle. Take her around the block and I can feel it missing under load. Strangely, it seems to not want to fire on Cylinder 4, while Cylinder 1 is good to go.
Checked coils (Dyna Greens installed last year). Resistances check out.
Worried that the relay failed, I swapped the connections to return to the stock wiring. She seemed to idle better, but another trip around the block showed the same missing cylinder.
The No. 4 header gets hot, but not nearly as hot as 1-3. So it's missing but not dead.
Hooked up a colortune to watch the spark in that cylinder, and it definitely comes through spotty.
So I trimmed a bit from the end of the plug lead and swapped the plugs around. Still not better.
Checked voltage at the coils, and there was a pretty significant drop (13v at battery but 8-9v at coils). So I picked up a new relay and wiring and completely rewired the coil relay.
With fresh clean wiring and fully charged battery, I get closer to 11v at the coils. Still a drop, but much better. She started and idled well in garage, so around the block we go. The bike pulled pretty well, but still occasionally pops through the pods and stutters like a missed cylinder. Not a steady and solid power loss (like a failed coil or ignition pick up) from dropping 2 cylinders.
Also, I checked the ignition timing and it's spot on.
The carbs are clean, and when No. 4 fires it shows bright bunson blue. Compression is solid and even across all four. Valves adjusted less than 1,000 miles back.
So what the hell? At this point I cannot figure out what else would disrupt the ignition to affect the one cylinder. Today, I'll check the wiring up front to see if there is something that might be disrupting the power feed to the relay itself (loose wire in headlight bucket?). Otherwise, I am out of ideas.
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