And here's the problem (sorry about the long post but it's nessessary to get the full picture) - it started before I put the new mufflers on with a noticable drop in mileage (220 kms per tank to about 190 before reserve) and engine noises ( a low seated "knocking" under no load coming from directly under cyls 3 and 4, and a higher pitched "rattling" like a ball bearing in a can at cruise with little load), so I put the new mufflers on and noticed substantially more heat radiating off the engine as well as number 2 header pipe started to blue at the first bend. SO I removed and reset the cam chain adjuster (seemed to get rid of the rattle) and reset the pilot air screws directly in front of the carb just before the head. At this point I noticed that #3 and 4 pipes not eminating any heat when idleing after start up (though they did seem to be working just fine under load and when warmed up), but did blow hot air out the exhuast when you snapped the throttle. I checked the temp on the pipes with a thermometer 110* on 1, 170* on 2, 110* on 3, 100* on 4. I also checked the firing voltages on the wires all were between 7.5 and 10 Kv, with no miss indicated, I checked the plugs and all 4 were reading just between white (not blistered) and slightly brownish tinge. I am also getting a backfire on the right pipe (fed by 3&4) on decel since the pilot screw adjustment. And the lower end knock is still there (maybe a minor main knock caused from 3 and 4 not having proper load on the piston?)
I am a class A mechanic but haven't had much expieriance with bikes yet, and at this point in time this bike is my only ride back and forth from work. I am debating whether to drop in another set of plugs before I readjust the pilot screws (the reason for the readjust is when I adjusted the screws the first time I noticed the lack of hot air from the right pipe and didn't connect the dots that the bike wasn't warmed up yet...hence should do another adjust fully warmed) or do the readjust first?
I am just about at the end of my rope and from the looks of it in over my head!
ANY help or advice would be appreciated, thanks in advance.

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