One weekend for the first time doing the top end? That's pretty aggressive. I know now I could do it in a long day, but I've been in there before. You haven't even broken off any exhaust screws yet on this job. Or one of the three little screws in the head. I hope you can get it in one, but two weekends with a trip to a machine shop is how I would schedule a top end I've never been into, just in case.
Make sure you have something like a green Roloc wheel for removing old gasket, plus a few hours' worth of patience for the stuff you can't do with the wheel. You might get lucky though. Judicious use of a tiny wire wheel on a Dremel may be necessary in spots.
Read through the procedure in the manual, study the parts and part names in the fiche. Have the head in your head to give yourself a running start.
Resist the temptation to pry on any cooling fin, no matter how sturdy it looks. In reality, they break to spite you. Nothing to do with how strong they are. If you think you can get a wood chisel into the gasket instead of aluminum, do that. Or, IIRC, the 550 head has room to get a block of wood under the end to bang on.
When lifting the cylinders, make sure the pistons aren't tilted and jamming in the bottom of the sleeve. Piston skirts are fragile and may be sharp. Tap gently to make sure they're free. Make sure you didn't forget a cam chain guide. Then pull harder on the cylinders. The threads on the studs like to hang up on the accumulated road grime they must pass through.
I may have missed an answer to the question of whether to leave it in the frame. Yes, do leave it in the frame.
Have fun.
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