What is causing your factory petcock to hit the cam cover? Mine is plenty of clearance. The Suzuki Factory petcocks are a lot more reliable than I gather some other bikes petcocks. I would definitely not want to be running manual on off petcock, as I figure I would be much more likely to forget it and let the carbs overflow. I would buy another new OEM petcock if I were worried about reliability.
Jim aka posplayr on here is the electronics guru.
Install a Polaris oem# 4012941 regulator rectifier ($50 used on ebay, don't use an aftermarket new equivalent to that part number, only oem Shindengen SH775 units under the oem# 4012941. Follow posplayr Jim's single point ground guidelines. Follow his charging system power distribution rewiring diagram with additional fuses installed. Use a standard Bosch automotive relay to power the coils and Dyna ignition. Use the orange coil power wire to splice into and extend and use as the coil relay trigger wire. Then run a new ground to the other coil trigger wire on the Bosch relay. Then a new wire from battery/power distribution point direct to relay common terminal. Then on the relay normally open terminal you run a wire to splice into the orange coil power feed wire and the Dyna. You would not believe how much voltage loss you will have at the coils with the Dyna turned on drawing power through the six or seven feet of wire and many old dirty connectors. The backside of the ignition switch (riveted wire terminals)is one of the biggest culprits. The kill switch is also in the loop. Much better engine/ignition performance after you do this.
As far as connectors, I just use some watertight bullet connectors of higher quality. Connectors that you can solder the wire into the pins and then assemble would be nicer. The ignition and headlight wiring are really the only ones that are very critical two carrying the full load of current through. They are the only ones that have a higher load and are terribly sensitive to voltage drop
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