Keep in mind most here are familiar with the Dynojet kits. The factory pro needles have a much different taper that almost looks stock. When I bought my needles from ray, I think he said I'd end up somewhere around 140 - I tried 138.5, 140, 142.5 and 145's before I settled on 142.5's. But as was stated earlier, every bike's a bit different - you'll just have to experiment. Luckily, the pods simplify removing the carbs because you're going to have to do it several times. Btw 47.5 is common pilot jet and you can change clip position with the carbs on the bike.
Are you saying with a stock GS1100 16V pods and pipe but using a Factory Pro needle you needed at MK142.5 Main instead of a MK127.5???
Did you do plugs chops or use a WB02 and how did you determine the main jet setting?