Dave,
While waiting for the rain to subside, you may want to review the VM Carb rebuild Pdf, specifically Page 3 which shows the internal components of a typical VM series carb. Does your pilot jet, fuel & air screws match the components shown in attached Pdf? I am still wondering why your spark plugs are black when you performed plug chops on the pilot circuit with stock GS1000 pilot jets (size 15) installed. This in light that you have a 1085 kit installed. Turning in the fuel screw a 1/4 and raising the needle one clip will sure lean it out but I am not convinced your spark plugs will suddenly turn light brown from pitch black unless those spitfire plugs are problematic.
But I could be wrong.
http://www.thegsresources.com/files/vm_carb_rebuild.pdf
All good info. How black they were concerned me too but the change I recommended is what I'd try myself. I can only assume the correct parts are in there and go by what he says is checked/done.
With a stock pilot and "ballpark" screw adjustments it makes me wonder too. The fact that these are 28's is what's different.
Nitro, what did you set the floats at? Do the 26's and 28's run the same float levels or?